PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G271700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 394aa    MW: 41777.4 Da    PI: 7.23
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G271700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.25.9e-34211262104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+ +                          
  Glyma.13G271700.1.p  21 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSSIDQLAHLppwkptlpspapphlnddhsdkpnpn 110
                          79**************************************************************88886654322222222222222211 PP

                  TCP  66 ......ssssaseceaesssssasnsssgkaaksaakskksqksa 104
                                +                             +++++++++
  Glyma.13G271700.1.p 111 pnpnpnP-----------------------------NPNPNHSPD 126
                          1111110.............................222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.9E-312184IPR005333Transcription factor, TCP
PROSITE profilePS5136933.252381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVRGSGGEIV QVEGGHIVRS TGRKDRHSKV CTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL INKAKSSIDQ LAHLPPWKPT LPSPAPPHLN DDHSDKPNPN PNPNPNPNPN  120
PNHSPDAQIL NQFDHDDGAG AGSSYLPMDN DAIRSFFPTT TSSLVQFQSY PPDLLSRTSS  180
QDLRLSLQSL QDPILLHHNH NNNEHVLFAG TAFDNMVAWN NNSNNNHNNN NHNNNNNNNN  240
NNNTASNDTC GGGGGGGGGG GGGGGGFVFN APSTLPGPAT VASPTVVFGH GYGQGQYFSQ  300
RGPLQSSNSP SVRAWIDAPS FVAAAADHRH HHYLSPAAAA AALVYQSAPP TAAFTAAPGG  360
FSGFRVPARI QGEEEHDGGM SDKPSSASSD SRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.420330.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621369.10.0PREDICTED: transcription factor TCP4-like
TrEMBLK7M2830.0K7M283_SOYBN; Uncharacterized protein
STRINGGLYMA13G34690.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-48TCP family protein